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The genomic view of diversification

Julie Marin , Guillaume Achaz , Anton Crombach , Amaury Lambert
Journal of Evolutionary Biology, 2020, 33 (10), pp.1387-1404. ⟨10.1111/jeb.13677⟩
Journal articles hal-03137815v1
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The quiescent X, the replicative Y and the Autosomes

Guillaume Achaz , Serge Gangloff , Benoît Arcangioli
Peer Community Journal, 2022, 2, pp.e18. ⟨10.24072/pcjournal.99⟩
Journal articles hal-03771709v1
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Molecular evolution through the joint lens of genomic and population processes

Guillaume Achaz
Other publications hal-02873037v1
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Utilization of interferometric light microscopy for the rapid analysis of virus abundance in a river

Céline Roose-Amsaleg , Yasmina Fedala , Catherine Vénien-Bryan , Josette Garnier , Albert-Claude Boccara , et al.
Research in Microbiology, 2017, ⟨10.1016/j.resmic.2017.02.004⟩
Journal articles hal-01497684v1

Clinical and genetic study of Tunisian families with genetic generalized epilepsy: contribution of CACNA1H and MAST4 genes

Zied Landoulsi , Fatma Laatar , Eric Noé , Saloua Mrabet , Mouna Ben Djebara , et al.
neurogenetics, 2018, 19 (3), pp.165-178. ⟨10.1007/s10048-018-0550-z⟩
Journal articles hal-04056044v1

Coalescent Processes with Skewed Offspring Distributions and Nonequilibrium Demography

Sebastian Matuszewski , Marcel E. Hildebrandt , Guillaume Achaz , Jeffrey D. Jensen
Genetics, 2018, 208 (1), pp.323--338. ⟨10.1534/genetics.117.300499⟩
Journal articles hal-03868087v1

A Molecular Portrait of De Novo Genes in Yeasts

Nikolaos Vakirlis , Alex Hebert , Dana Opulente , Guillaume Achaz , Chris Todd Hittinger , et al.
Molecular Biology and Evolution, 2018, 35 (3), pp.631-645. ⟨10.1093/molbev/msx315⟩
Journal articles hal-02164404v1
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Pros and Cons of local adaptation scans

Guillaume Achaz
Other publications hal-02549842v1

Label free optical transmission tomography for biosystems: intracellular structures and dynamics

Viacheslav Mazlin , Olivier Thouvenin , Samer Alhaddad , Martine Boccara , Claude Boccara
Biomedical optics express, 2022, 13 (8), pp.4190. ⟨10.1364/BOE.453586⟩
Journal articles hal-03932477v1
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Quiescence unveils a novel mutational force in fission yeast

Serge Gangloff , Guillaume Achaz , Stefania Francesconi , Adrien Villain , Samia Miled , et al.
eLife, 2017, 6, pp.e27469. ⟨10.7554/eLife.27469⟩
Journal articles hal-01678930v1
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The Impact of Selection, Gene Conversion, and Biased Sampling on the Assessment of Microbial Demography

Marguerite Lapierre , Camille Blin , Amaury Lambert , Guillaume Achaz , Eduardo P C Rocha
Molecular Biology and Evolution, 2016, 33, pp.1711 - 1725. ⟨10.1093/molbev/msw048⟩
Journal articles pasteur-01374966v1

The neutral frequency spectrum of linked sites

Luca Ferretti , Alexander Klassmann , Emanuele Raineri , Sebastián Ramos-Onsins , Thomas Wiehe , et al.
Theoretical Population Biology, 2018, 123, pp.70-79. ⟨10.1016/j.tpb.2018.06.001⟩
Journal articles hal-04056032v1
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TiPS : Rapidly simulating trajectories and phylogenies from compartmental models

Gonché Danesh , Emma Saulnier , Olivier Gascuel , Marc Choisy , Samuel Alizon
Methods in Ecology and Evolution, 2022, ⟨10.1111/2041-210X.14038⟩
Journal articles hal-03903561v1

Cultural transmission of reproductive success impacts genomic diversity, coalescent tree topologies and demographic inferences

Jérémy Guez , Guillaume Achaz , François Bienvenu , Jean Cury , Bruno Toupance , et al.
Journal articles hal-03875721v1

TiPS: rapidly simulating trajectories and phylogenies from compartmental models

Gonché Danesh , Emma Saulnier , Olivier Gascuel , Marc Choisy , Samuel Alizon
Preprints, Working Papers, ... hal-03872312v1

Correction: The landscape of epilepsy-related GATOR1 variants

Sara Baldassari , Fabienne Picard , Nienke E. Verbeek , Marjan van Kempen , Eva Brilstra , et al.
Genetics in Medicine, 2019, 21 (8), pp.1896-1896. ⟨10.1038/s41436-018-0325-9⟩
Journal articles hal-02066352v1
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ASAP: assemble species by automatic partitioning

Nicolas Puillandre , Sophie Brouillet , Guillaume Achaz
Molecular Ecology Resources, 2020, 21 (2), ⟨10.1111/1755-0998.13281⟩
Journal articles hal-03039819v1
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Testing for population decline using maximal linkage disequilibrium blocks

Elise Kerdoncuff , Amaury Lambert , Guillaume Achaz
Theoretical Population Biology, 2020, 134, pp.171 - 181. ⟨10.1016/j.tpb.2020.03.004⟩
Journal articles hal-03492554v1

Evolutionary Constraints in Fitness Landscapes

Luca Ferretti , Daniel Weinreich , Fumio Tajima , Guillaume Achaz
Heredity, 2018, 121 (5), pp.466--481. ⟨10.1038/s41437-018-0110-1⟩
Journal articles hal-03868076v1

The Sequential Loss of Allelic Diversity

Guillaume Achaz , Amaury Lambert , Emmanuel Schertzer
Advances in Applied Probability, 2018, 50 (A), pp.13--29. ⟨10.1017/apr.2018.67⟩
Journal articles hal-03848021v1
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Is convergence an evidence for positive selection?

Guillaume Achaz
Peer Community in Evolutionary Biology, 2018, pp.100060. ⟨10.24072/pci.evolbiol.100060⟩
Journal articles hal-01929588v1

From individual-based epidemic models to McKendrick-von Foerster PDEs: a guide to modeling and inferring COVID-19 dynamics

Félix Foutel-Rodier , François Blanquart , Philibert Courau , Peter Czuppon , Jean-Jil Duchamps , et al.
Journal of Mathematical Biology, 2022, 85 (4), pp.43. ⟨10.1007/s00285-022-01794-4⟩
Journal articles hal-03796030v1

The landscape of epilepsy-related GATOR1 variants

Sara Baldassari , Fabienne Picard , Nienke E. Verbeek , Marjan van Kempen , Eva Brilstra , et al.
Genetics in Medicine, 2019, 21 (2), pp.398-408. ⟨10.1038/s41436-018-0060-2⟩
Journal articles hal-02063270v1

Is reproductive strategy a key factor in understanding the evolutionary history of Southern Ocean Asteroidea (Echinodermata)?

Camille Moreau , Bruno Danis , Quentin Jossart , Marc Eléaume , Chester Sands , et al.
Ecology and Evolution, 2019, 9 (15), pp.8465-8478. ⟨10.1002/ece3.5280⟩
Journal articles hal-02270055v1
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Mobilisation de la FRB par les pouvoirs publics français sur les liens entre Covid-19 et biodiversité

Jean-François Silvain , Robin Goffaux , Hélène Soubelet , Francois Sarrazin , Luc Abbadie , et al.
[0] FRB. 2021, 63 p
Reports hal-04179836v1
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No HIV-1 molecular evolution on long-term antiretroviral therapy initiated during primary HIV-1 infection

Basma Abdi , Thuy Nguyen , Sophie Brouillet , Nathalie Desire , Sophie Sayon , et al.
AIDS. Official journal of the international AIDS Society, 2020, 34 (12), pp.1745-1753. ⟨10.1097/QAD.0000000000002629⟩
Journal articles hal-03182806v1

Does aquatic foraging impact head shape evolution in snakes?

Marion Segall , Raphael Cornette , Anne-Claire Fabre , Ramiro Godoy-Diana , Anthony Herrel
Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1837), pp.20161645. ⟨10.1098/rspb.2016.1645⟩
Journal articles hal-02145281v1
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Comparative Genomics of Tenacibaculum dicentrarchi and “Tenacibaculum finnmarkense” Highlights Intricate Evolution of Fish-Pathogenic Species

Sébastien Bridel , Anne-Berit Olsen , Hanne Nilsen , Jean-François Bernardet , Guillaume Achaz , et al.
Genome Biology and Evolution, 2018, 10 (2), pp.452 - 457. ⟨10.1093/gbe/evy020⟩
Journal articles hal-01744087v1

Decomposing the Site Frequency Spectrum: The Impact of Tree Topology on Neutrality Tests

Luca Ferretti , Alice Ledda , Thomas Wiehe , Guillaume Achaz , Sebastian Ramos-Onsins
Genetics, 2017, 207 (1), pp.229-240. ⟨10.1534/genetics.116.188763⟩
Journal articles hal-04056078v1
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MOLD, a novel software to compile accurate and reliable DNA diagnoses for taxonomic descriptions

A.E. Fedosov , Guillaume Achaz , Andrey Gontchar , Nicolas Puillandre
Molecular Ecology Resources, 2022, 5, pp.2038-2053. ⟨10.1111/1755-0998.13590⟩
Journal articles hal-03663253v1